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LithosAnanake/docs/INDEX.md
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rajamesandClaude Opus 5.5 776c89457e docs: the map, a fresh index, and a register of dead ideas and revised claims 
docs/CLAUDE.md Phase 1 output, after the reorganisation.

- docs/README.md: rewritten as the map -- where each kind of document
  lives, which one to believe (CLAUDE.md, FABRIC, v4.0.0, reference/,
  BRINGUP, code), how to retire a document.
- docs/INDEX.md: regenerated from the tracked tree, 489 rows, every
  document with a status (the 2026-06-16 snapshot was stale).
- docs/DEAD-AND-REVISED.md (new): what was abandoned (L4Re, the hal_*
  contract, ACL RWT, the Hermes VM, elevation, the knowledge factor, ...)
  and what was corrected (ACL overhead, versions, block rules, parity
  baseline, ...), each with its date and record.
- docs/DELETE-CANDIDATES.md: 12 duplicates, awaiting a ruling; nothing
  deleted.
- CLAUDE.md: versions corrected (3.2.0 / 2.1.0).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-14 16:06:59 -04:00

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# docs/INDEX.md — every document, and its status
Generated 2026-10-14 by the docs triage (docs/CLAUDE.md, Phase 1), from the tracked tree
after the reorganisation. Start at **[README.md](README.md)** for the map; abandoned ideas and
revised claims are in **[DEAD-AND-REVISED.md](DEAD-AND-REVISED.md)**; files awaiting a delete
ruling are in **[DELETE-CANDIDATES.md](DELETE-CANDIDATES.md)**. Logs (`logs/`) and DoE run
CSVs are not listed. Bulk data folders, and the formal LaTeX tree (governed by
`docs/formal/CLAUDE.md`), are listed one row per folder.
| Status | Meaning | Rows |
|---|---|---|
| CURRENT | Accurate; reflects the system as it is | 96 |
| WORKING | Living draft or record, still edited | 128 |
| HISTORICAL | Accurate for its time; kept as record | 90 |
| SUPERSEDED | Replaced -- its header says by what | 26 |
| DEAD | An idea or design that was abandoned or never adopted | 12 |
| DELETE | Proposed for deletion, awaiting a ruling | 12 |
| RECORD | Experiment data and results | 50 |
| FORMAL | The press-ready LaTeX tier | 19 |
| LEGAL HOLD | Patent-adjacent; not touched without Captain Bob | 57 |
## .claude
| Path | Title | Status | Notes |
|---|---|---|---|
| .claude/ARTEMIS.md | ARTEMIS.md — Artemis VM Architecture | SUPERSEDED | Frozen 2026-08-15 by ruling (archive as-is); see FABRIC-3.5/3.6. |
| .claude/CLAUDE.md | CLAUDE.md | CURRENT | Project instructions and status; authoritative. |
| .claude/CONSOLE.md | CONSOLE.md — Console VM Architecture (DRAFT) | SUPERSEDED | Frozen 2026-08-15; see FABRIC-3.5/3.6. |
| .claude/HERMES.md | HERMES.md — Hermes VM Architecture | SUPERSEDED | Frozen 2026-08-15; describes a VM that no longer exists. See FABRIC-3.5/3.6. |
| .claude/README.md | .claude/ | CURRENT | |
| .claude/TRIPOD.md | TRIPOD.md — Architectural Constraints for the Tripod VMs | SUPERSEDED | Frozen 2026-08-15; see FABRIC-3.5/3.6. |
## (root)
| Path | Title | Status | Notes |
|---|---|---|---|
| CHANGELOG.md | Changelog | CURRENT | |
| CODE_OF_CONDUCT.md | Contributor Covenant Code of Conduct | CURRENT | |
| CONTRIBUTING.md | Contributing to StarForth | CURRENT | |
| NOTICE.md | NOTICE.md | CURRENT | |
| README.md | LithosAnanke v2.0.1 | CURRENT | |
## boards
| Path | Title | Status | Notes |
|---|---|---|---|
| boards/BRINGUP.md | Board bring-up checklist | WORKING | Bare-metal bring-up checklist and blockers. |
| boards/README.md | boards/ | CURRENT | |
| boards/milkv/README.md | Milk-V Mars boot media | CURRENT | |
| boards/raspi/README.md | Raspberry Pi 5 native boot media | CURRENT | |
| boards/raspi/config.txt | LithosAnanke native (non-UEFI) boot config for Raspberry Pi 5 (BCM2712). | CURRENT | |
| boards/ser5/README.md | Beelink SER5 boot media | CURRENT | |
| boards/zynq7020/README.md | Xilinx Zynq-7020 boot media | CURRENT | |
## capsules
| Path | Title | Status | Notes |
|---|---|---|---|
| capsules/BLOCK_MAP.md | Capsule Block Manifest — Auto-generated | CURRENT | |
| capsules/MANIFEST.md | capsules/MANIFEST.md — Block Ownership Registry (justifications) | CURRENT | |
| capsules/MANIFEST_AUTO.md | Capsule Block Manifest — Auto-generated | CURRENT | |
| capsules/README.md | capsules/ | CURRENT | |
| capsules/contrib/README.md | capsules/contrib/ | CURRENT | |
| capsules/fonts/README.md | capsules/fonts/ | CURRENT | |
## configs
| Path | Title | Status | Notes |
|---|---|---|---|
| configs/README.md | configs/ | CURRENT | |
## disk
| Path | Title | Status | Notes |
|---|---|---|---|
| disk/README.md | disk/ | CURRENT | |
## docs
| Path | Title | Status | Notes |
|---|---|---|---|
| docs/CLAUDE.md | CLAUDE.md — StarshipOS Documentation Root | CURRENT | Rules for documentation work. |
| docs/DEAD-AND-REVISED.md | Dead ideas and revised claims | CURRENT | Register of abandoned ideas and revised claims. |
| docs/DELETE-CANDIDATES.md | docs/DELETE-CANDIDATES.md | CURRENT | Awaiting Captain Bob's ruling. |
| docs/INDEX.md | docs/INDEX.md — every document, and its status | CURRENT | This index. |
| docs/README.md | StarForth / LithosAnanke documentation — the map | CURRENT | The map: start here. |
| docs/SSM_DARPA_Summary_Slide.pptx | SSM_DARPA_Summary_Slide.pptx | CURRENT | |
## docs/book
| Path | Title | Status | Notes |
|---|---|---|---|
| docs/book/README.md | docs/book/ | CURRENT | |
| docs/book/main.tex | LithosAnanke and StarForth | CURRENT | |
## docs/fabric
| Path | Title | Status | Notes |
|---|---|---|---|
| docs/fabric/FABRIC-0.md | FABRIC-0.md — the Stadium | HISTORICAL | Closed design record (the Stadium). |
| docs/fabric/FABRIC-1.md | FABRIC-1.md — the Stadium, continued | HISTORICAL | Closed design record. |
| docs/fabric/FABRIC-2.md | FABRIC-2.md — the Stadium, continued again | HISTORICAL | Closed design record. |
| docs/fabric/FABRIC-3.5.md | FABRIC-3.5.md — the Tripod/kernel reshuffle | HISTORICAL | Closed at v2.1.0: the Tripod/kernel reshuffle, design. Authoritative for what it ruled. |
| docs/fabric/FABRIC-3.6.md | FABRIC-3.6.md — the Tripod/kernel reshuffle: execution log | HISTORICAL | Closed at v2.1.0: the reshuffle, execution. |
| docs/fabric/FABRIC-3.7.md | FABRIC-3.7.md — Phase 8 PKI: the elevation entrypoint | DEAD | Closed 2026-10-14: elevation ruled not needed and removed (FABRIC-3 XXXVII). |
| docs/fabric/FABRIC-3.md | FABRIC-3.md — bare metal boot | WORKING | The living record: bare metal boot and everything since. Authoritative. |
| docs/fabric/FABRIC-4.md | FABRIC-4.md — forward-looking design notes | WORKING | Ideas caught early, not yet scoped. |
## docs/formal
| Path | Title | Status | Notes |
|---|---|---|---|
| docs/formal/CLAUDE.md | docs/formal/CLAUDE.md — Authoring Conventions for the Formal Documentation Tier | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/README.md | docs/formal/ | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/common/ | 2 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/cookbook/ | 2 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/dev-guide/ | 2 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/experiments/ | 2 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/patent/ | 1 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/proofs/ | 2 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/scraps/ | 1 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/scraps/architecture/ | 49 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/scraps/archive/ | 81 files | SUPERSEDED | Flagged obsolete in its own header. |
| docs/formal/scraps/experiments/ | 31 files | HISTORICAL | Flagged in its own header. |
| docs/formal/scraps/hardware/ | 10 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/scraps/legal/ | 1 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/scraps/papers/ | 13 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/scraps/scratch/ | 23 files | HISTORICAL | Flagged in its own header. |
| docs/formal/scraps/specifications/ | 1 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/ssrn/ | 2 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/user-guide/ | 2 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/vol1-vm-physics/ | 9 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/vol2-kernel/ | 8 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
| docs/formal/vol3-research/ | 11 files | FORMAL | Press tier; see docs/formal/CLAUDE.md. |
## docs/lithosananke
| Path | Title | Status | Notes |
|---|---|---|---|
| docs/lithosananke/hal/README.md | LithosAnanke Hardware Abstraction Layer (HAL) | DELETE | Duplicate of docs/working/archive/dead/hal-target-contract/README.md, without that copy's 2026-10-09 "never adopted" flags. |
| docs/lithosananke/hal/interfaces.md | HAL Interface Specifications | DELETE | Duplicate (older, unflagged) of docs/working/archive/dead/hal-target-contract/interfaces.md. |
| docs/lithosananke/hal/lithosananke-integration.md | LithosAnanke HAL Integration Guide | DELETE | The same document as docs/working/archive/dead/hal-target-contract/starkernel-integration.md under the kernel's newer name, without its "obsolete" flag. |
| docs/lithosananke/hal/migration-plan.md | HAL Migration Plan | DELETE | Duplicate (older, unflagged) of docs/working/archive/dead/hal-target-contract/migration-plan.md. |
| docs/lithosananke/hal/overview.md | Hardware Abstraction Layer (HAL) Architecture | DELETE | Duplicate (older) of docs/working/archive/dead/hal-target-contract/overview.md. |
| docs/lithosananke/hal/platform-implementations.md | HAL Platform Implementation Guide | DELETE | Duplicate (older, unflagged) of docs/working/archive/dead/hal-target-contract/platform-implementations.md. |
## docs/patent
| Path | Title | Status | Notes |
|---|---|---|---|
| docs/patent/CHANGES_SUMMARY.md | Patent Application Review and Changes | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/JARGON_CHANGES.md | Jargon Removal and Precision Language Changes | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/README_V3.md | StarForth Patent Application Version 3.0 | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/USPTO_COVER_LETTER.md | USPTO PROVISIONAL PATENT APPLICATION | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/bibliography/bibliography.tex | bibliography.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/figures/fig1_snake_trajectory.pdf | fig1_snake_trajectory.pdf | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/figures/fig2_K_vs_window.pdf | fig2_K_vs_window.pdf | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/figures/fig3_FFT_spectrum.pdf | fig3_FFT_spectrum.pdf | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/figures/fig4_golden_ratio_penalties.pdf | fig4_golden_ratio_penalties.pdf | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/figures/fig5_bimodal_distributions.pdf | fig5_bimodal_distributions.pdf | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/figures/fig6_performance_vs_k.pdf | fig6_performance_vs_k.pdf | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/figures/fig7_performance_by_regime.pdf | fig7_performance_by_regime.pdf | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/final_provisional/cover_letter.txt | cover_letter.txt | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/final_provisional/sb0015a.pdf | sb0015a.pdf | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/final_provisional/sb0016.pdf | sb0016.pdf | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/final_provisional/ssm_RAJ_v1_patent_application.pdf | ssm_RAJ_v1_patent_application.pdf | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/macros/commands.tex | commands.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/main.pdf | main.pdf | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/main.tex | main.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sb0015a.pdf | sb0015a.pdf | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sb0016.pdf | sb0016.pdf | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/00_claims_validation_v3.tex | 00_claims_validation_v3.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/00_complete_patent_v3.tex | 00_complete_patent_v3.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/01_title.tex | 01_title.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/01_title_v2.tex | 01_title_v2.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/02_field.tex | 02_field.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/02_field_v2.tex | 02_field_v2.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/03_background.tex | 03_background.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/03_background_v2.tex | 03_background_v2.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/04_summary.tex | 04_summary.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/04_summary_v2.tex | 04_summary_v2.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/05_drawings.tex | 05_drawings.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/06_detailed_description.tex | 06_detailed_description.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/06_detailed_description_v2.tex | 06_detailed_description_v2.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/07_embodiments.tex | 07_embodiments.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/08_claims.tex | 08_claims.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/08_claims_REAL.tex | 08_claims_REAL.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/08_claims_v2.tex | 08_claims_v2.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/09_validation.tex | 09_validation.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/09_validation_v2.tex | 09_validation_v2.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/10_implementation.tex | 10_implementation.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/11_abstract.tex | 11_abstract.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/11_abstract_REAL.tex | 11_abstract_REAL.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/11_abstract_v2.tex | 11_abstract_v2.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/11_appendix.tex | 11_appendix.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/12_appendix.tex | 12_appendix.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/RAJ_v1_01_background.tex | RAJ_v1_01_background.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/RAJ_v1_02_summary.tex | RAJ_v1_02_summary.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/RAJ_v1_03_drawings.tex | RAJ_v1_03_drawings.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/RAJ_v1_04_detailed_description.tex | RAJ_v1_04_detailed_description.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/RAJ_v1_05_claims.tex | RAJ_v1_05_claims.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/RAJ_v1_06_abstract.tex | RAJ_v1_06_abstract.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/sections/architecture_diagram_clean.tex | architecture_diagram_clean.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/ssm_RAJ_v1_patent_application.pdf | ssm_RAJ_v1_patent_application.pdf | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/ssm_RAJ_v1_patent_application.tex | ssm_RAJ_v1_patent_application.tex | LEGAL HOLD | Not touched without Captain Bob. |
| docs/patent/ssm_provisional_patent.tex | ssm_provisional_patent.tex | LEGAL HOLD | Not touched without Captain Bob. |
## docs/pptx
| Path | Title | Status | Notes |
|---|---|---|---|
| docs/pptx/01-technical-elevator-pitch.pptx | 01-technical-elevator-pitch.pptx | CURRENT | |
| docs/pptx/02-nontechnical-elevator-pitch.pptx | 02-nontechnical-elevator-pitch.pptx | CURRENT | |
| docs/pptx/03-academic-overview.pptx | 03-academic-overview.pptx | CURRENT | |
| docs/pptx/04-phd-deep-dive.pptx | 04-phd-deep-dive.pptx | CURRENT | |
| docs/pptx/README.md | docs/pptx/ | CURRENT | |
## docs/reference
| Path | Title | Status | Notes |
|---|---|---|---|
| docs/reference/DICTIONARY.md | LithosAnanke / StarForth — Word Dictionary Reference | CURRENT | |
| docs/reference/L8_ADAPTIVE_CONFIG_TABLE.md | L8 Jacquard: Adaptive 128-Config Heat-Ranked Selector | CURRENT | |
| docs/reference/M7.1.md | M7.1: Init Capsule Architecture | CURRENT | |
| docs/reference/ONTOLOGY.md | StarForth Ontology, Taxonomy, and Lexicon | CURRENT | |
| docs/reference/ROADMAP.md | LithosAnanke Roadmap | CURRENT | Roadmap and the ratified release-versioning policy. |
| docs/reference/STARFORTH_PRIMITIVES.md | StarForth Primitive Word Reference | CURRENT | |
| docs/reference/hosted-acceptance-test/README.md | Hosted StarForth — 3-Architecture Acceptance Test | CURRENT | |
| docs/reference/kernel-args/DESIGN.md | Kernel Command-Line Arguments (KernelArgs) | CURRENT | |
| docs/reference/kernel-args/README.md | docs/reference/kernel-args/ | CURRENT | |
| docs/reference/word-acl/DESIGN.md | Word-Level ACL System | CURRENT | |
| docs/reference/word-acl/README.md | docs/reference/word-acl/ | CURRENT | |
## docs/v4.0.0
| Path | Title | Status | Notes |
|---|---|---|---|
| docs/v4.0.0/DECOMPOSITION.md | StarForth v4.0.0 — Primitive Decomposition | CURRENT | |
| docs/v4.0.0/ENGINE.md | StarForth v4.0.0 — The F18 engine in the VM's place | CURRENT | |
| docs/v4.0.0/JUSTIFICATION.md | StarForth v4.0.0 — Justification | CURRENT | |
| docs/v4.0.0/MESH.md | StarForth v4.0.0 — Talking nodes | CURRENT | |
| docs/v4.0.0/NUCLEUS.md | StarForth v4.0.0 — Nucleus, FORTH-79 Capsule and POST | CURRENT | |
| docs/v4.0.0/POST79.md | POST for the FORTH-79 Required Word Set: where it departs from v3 | CURRENT | |
| docs/v4.0.0/V3-PARITY.md | StarForth v4.0.0 — Parity with v3 up to the first prompt | CURRENT | |
| docs/v4.0.0/plans/2026-10-06-step6-storage.md | Step 6: Storage Implementation Plan (revised 2026-10-07) | HISTORICAL | An executed step plan. |
| docs/v4.0.0/plans/2026-10-07-step6b-post.md | Step 6b: POST Is the Kernel's — Implementation Plan | HISTORICAL | An executed step plan. |
| docs/v4.0.0/plans/2026-10-07-step6c-refusals-and-waits.md | Step 6c: Refusals and Waits — Implementation Plan | HISTORICAL | An executed step plan. |
| docs/v4.0.0/plans/2026-10-07-step6d-the-wait.md | Step 6d: The Wait — Implementation Plan | HISTORICAL | An executed step plan. |
| docs/v4.0.0/plans/2026-10-08-step6e-messages-on-the-wire.md | Step 6e: Messages on the Wire — Implementation Plan | HISTORICAL | An executed step plan. |
## docs/working
| Path | Title | Status | Notes |
|---|---|---|---|
| docs/working/README.md | docs/working/ — Living Documentation | WORKING | |
| docs/working/architecture/03-architecture/OVERVIEW.md | StarForth Architecture Overview | WORKING | |
| docs/working/architecture/03-architecture/README.md | Architecture | WORKING | |
| docs/working/architecture/03-architecture/adaptive-systems/adaptive-window-and-decay.md | Adaptive Window Shrinking & Decay Slope Investigation | WORKING | |
| docs/working/architecture/03-architecture/adaptive-systems/multivariate-dynamics.md | StarForth Multivariate Coupled Dynamics Experiment | WORKING | |
| docs/working/architecture/03-architecture/adaptive-systems/window-inference-redesign.md | Window Width Inference Redesign - Statistically Valid Approach | WORKING | |
| docs/working/architecture/03-architecture/heartbeat-system/architecture.md | VM Heartbeat Architecture: Centralized Time-Based Tuning | WORKING | |
| docs/working/architecture/03-architecture/heartbeat-system/critical-insight.md | CRITICAL INSIGHT: Heartbeat Rate is Variable, Not Fixed | WORKING | |
| docs/working/architecture/03-architecture/heartbeat-system/instrumentation-plan.md | Heartbeat Per-Tick Instrumentation Plan | WORKING | |
| docs/working/architecture/03-architecture/heartbeat-system/segfault-analysis.md | Heartbeat Segfault Root Cause Analysis & Repair | WORKING | |
| docs/working/architecture/03-architecture/physics-engine/feedback-loops.md | StarForth Physics Feedback Loops | WORKING | The seven feedback loops. |
| docs/working/architecture/03-architecture/physics-engine/monitoring-principles.md | StarForth Physics Runtime | WORKING | |
| docs/working/architecture/03-architecture/physics-engine/ssm-equations.md | Mathematical Analysis of the Steady-State Machine | WORKING | |
| docs/working/architecture/03-architecture/physics-engine/ssm-raw-data-analysis.md | Steady-State Machine (SSM): Raw Experimental Data Analysis | WORKING | |
| docs/working/architecture/03-architecture/pipelining/context-window-and-binary-chop.md | Phase 1 Extension: Context Window & Phase 2 Binary Chop Tuning | WORKING | |
| docs/working/architecture/03-architecture/pipelining/design.md | FORTH VM Pipelining & Speculative Execution Design | WORKING | |
| docs/working/architecture/03-architecture/pipelining/phase-1-instrumentation.md | Phase 1: Pipelining Instrumentation | WORKING | |
| docs/working/architecture/03-architecture/pipelining/wired-not-utilized.md | Pipelining Feedback Loop: WIRED BUT NOT UTILIZED (Critical Issue) | WORKING | |
| docs/working/architecture/03-architecture/word-acl/DESIGN.md | Word-Level ACL System | DELETE | Older copy (2026-06) of docs/reference/word-acl/DESIGN.md, which is the maintained one (status through Phase 7). |
| docs/working/architecture/ARTEMIS-BAM-ACCEPTANCE-20260703.md | Artemis BAM — Phase 1 Acceptance Report | WORKING | |
| docs/working/architecture/ARTEMIS-BLOCK-PHYSICS-DESIGN-20260708.md | Artemis Block Heat Physics — Design Doc | WORKING | |
| docs/working/architecture/ARTEMIS-FREEMAP-CAPSULE-RESERVATION-GAP-20260710.md | Artemis Free-Map Doesn't Reserve Capsule-Claimed Blocks | WORKING | |
| docs/working/architecture/CAPSULE-BLOCK-PERSISTENCE-BOUNDARY-FINDING-20260709.md | Capsule Loader — Missing Persistence Boundary Check | WORKING | |
| docs/working/architecture/CAPSULE-LOADER-DEFINITIONS-ONLY-DESIGN-20260709.md | Capsules Load Definitions Only — Design Doc | WORKING | |
| docs/working/architecture/DOE-LIBRARY-HOWTO-20260819.md | DoE Library HOWTO — `capsules/doe.4th` | CURRENT | HOWTO for capsules/doe.4th. |
| docs/working/architecture/K-PUSH-DICTIONARY-SHADOWING-BUG-20260704.md | K-PUSH Dictionary Shadowing Bug — Full Report | WORKING | |
| docs/working/architecture/MAMA_FORTH_SUPERVISOR_ARCHITECTURE.adoc | Mama Forth: Multi-VM Supervisor Architecture | WORKING | |
| docs/working/architecture/PHYSICS_CONE_OF_INFLUENCE_DESIGN.adoc | Physics Engine: Cone of Influence Design | WORKING | |
| docs/working/architecture/PHYSICS_CONTROL_SYSTEM_DESIGN.adoc | Physics Control System: Observables → Scheduling & Memory Management | WORKING | |
| docs/working/architecture/PHYSICS_SIGNAL_MAP.adoc | Physics Signal Inventory | WORKING | |
| docs/working/architecture/README.md | docs/working/architecture/ | WORKING | |
| docs/working/architecture/SDK-HOWTO-20260819.md | SDK HOWTO — `capsules/sdk.4th` | WORKING | |
| docs/working/architecture/TURTLE-GRAPHICS-HOWTO-20260819.md | Turtle Graphics HOWTO — `capsules/turtle.4th` | WORKING | |
| docs/working/architecture/VM-FLEET-ATTRACTOR-DESIGN-20260705.md | VM Fleet Attractor Experiment — Design Doc | WORKING | Fleet physics; pre-reshuffle (names the Hermes VM) but still the source for the attractor design. |
| docs/working/architecture/VM-PHYSICS-DYNAMIC-FLEET-DESIGN-20260705.md | Dynamic VM Fleet Physics — Design Doc | WORKING | |
| docs/working/architecture/VM_FORMALIZATION_PLAN.adoc | VM Formalization Roadmap | WORKING | |
| docs/working/architecture/architecture-internals/INIT_SYSTEM.adoc | L4RE_TARGET | WORKING | |
| docs/working/architecture/architecture-internals/MESSAGING.adoc | SFM_THERMO_H | WORKING | |
| docs/working/architecture/build-and-tooling/BUILD_OPTIONS.adoc | defined(__x86_64__) // defined(_M_X64) // defined(__amd64__) | WORKING | |
| docs/working/architecture/build-and-tooling/DOCUMENTATION_README.adoc | Generate the AsciiDoc API documentation | WORKING | |
| docs/working/architecture/build-and-tooling/INIT_TOOLS.adoc | 1. Work in disk (using StarForth REPL) | WORKING | |
| docs/working/architecture/doxygen/DOXYGEN_QUICK_REFERENCE.adoc | MACRO_NAME value | WORKING | |
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| docs/working/architecture/getting-started/DEVELOPER.md | StarForth Developer Guide | WORKING | |
| docs/working/architecture/getting-started/INSTALL.adoc | Build package | WORKING | |
| docs/working/architecture/getting-started/QUICKSTART.adoc | Build the fastest version for your platform | WORKING | |
| docs/working/architecture/getting-started/README.md | Getting Started with StarForth | WORKING | |
| docs/working/architecture/getting-started/quick-start/heartbeat-doe.md | StarForth Heartbeat DoE – Quick Start | WORKING | |
| docs/working/architecture/getting-started/quick-start/optimization-doe.md | Quick Start: Optimization DoE | WORKING | |
| docs/working/architecture/heartbeat_csv_export.md | Heartbeat CSV Export - Real-Time VM Metrics | WORKING | |
| docs/working/archive/COMPUTATIONAL_PHYSICS_FRAMEWORK.md | The Physics of Adaptive Computation | HISTORICAL | |
| docs/working/archive/DOCUMENTATION_AUDIT.md | StarForth Documentation Audit | HISTORICAL | |
| docs/working/archive/GAP_ANALYSIS.md | Gap Analysis: Missing Evolutionary Links | HISTORICAL | |
| docs/working/archive/README.md | docs/working/archive/ | HISTORICAL | |
| docs/working/archive/artifacts/kanban-workflow/MANIFEST.adoc | Kanban Workflow Artifacts Manifest | HISTORICAL | |
| docs/working/archive/dead/hal-target-contract/README.md | Hardware Abstraction Layer (HAL) Documentation | DEAD | See the file's own header. |
| docs/working/archive/dead/hal-target-contract/interfaces.md | HAL Interface Specifications | DEAD | See the file's own header. |
| docs/working/archive/dead/hal-target-contract/migration-plan.md | HAL Migration Plan | DEAD | See the file's own header. |
| docs/working/archive/dead/hal-target-contract/overview.md | Hardware Abstraction Layer (HAL) Architecture | DEAD | See the file's own header. |
| docs/working/archive/dead/hal-target-contract/platform-implementations.md | HAL Platform Implementation Guide | DEAD | See the file's own header. |
| docs/working/archive/dead/hal-target-contract/starkernel-integration.md | StarKernel HAL Integration Guide | DEAD | See the file's own header. |
| docs/working/archive/dead/l4re/L4RE_DICTIONARY_ALLOCATION.adoc | STARFORTH_VM_DICT_ALLOC | DEAD | See the file's own header. |
| docs/working/archive/dead/l4re/L4RE_INTEGRATION.adoc | Subdirectories to build | DEAD | See the file's own header. |
| docs/working/archive/dead/l4re/L4RE_INTEGRATION_TODO.adoc | Note: Do NOT copy time_posix.c - not needed in L4Re build | DEAD | See the file's own header. |
| docs/working/archive/dead/l4re/l_4_re_blkio_endpoints.adoc | l_4_re_blkio_endpoints.adoc | DEAD | See the file's own header. |
| docs/working/archive/dead/metrics-and-knobs.md | StarForth Metrics & Knobs: GAPS ONLY | DEAD | See the file's own header. |
| docs/working/archive/historical/2026-01-27-system-architecture-draft.md | LithosAnanke System Architecture | HISTORICAL | |
| docs/working/archive/historical/2026-06-03-test-gap-audit.md | StarForth Dictionary Test Coverage — Gap Audit | HISTORICAL | |
| docs/working/archive/historical/2026-06-10-next-session-plan.md | Next Session Plan | HISTORICAL | |
| docs/working/archive/historical/2026-06-30-break-me-report.md | 🔥 STARFORTH BREAK-ME DIAGNOSTIC REPORT 🔥 | HISTORICAL | |
| docs/working/archive/historical/2026-07-amd64-isr-fix/README.md | APIC Timer ISR Fix — amd64 | HISTORICAL | |
| docs/working/archive/historical/2026-07-birthing/PLAN.md | Birthing Plan: Child VMs Born of Hera | HISTORICAL | |
| docs/working/archive/historical/2026-07-birthing/README.md | docs/working/archive/historical/2026-07-birthing/ | HISTORICAL | |
| docs/working/archive/historical/2026-07-birthing/STATUS.md | Birthing — Work Status and Context | HISTORICAL | |
| docs/working/archive/historical/2026-07-birthing/acceptance-logs/README.md | docs/working/archive/historical/2026-07-birthing/acceptance-logs/ | HISTORICAL | |
| docs/working/archive/historical/2026-07-birthing/acceptance-logs/SUMMARY.md | Birthing — Kernel QEMU Acceptance Test Summary | HISTORICAL | |
| docs/working/archive/historical/2026-08-riscv64-stack-fix/README.md | Kernel Stack Trampoline Fix — riscv64 | HISTORICAL | |
| docs/working/archive/historical/2026-10-lithosananke-orientation.md | LithosAnanke — StarForth Kernel Branch | HISTORICAL | |
| docs/working/archive/legacy/OPTIMIZATION_OPPORTUNITIES.md | StarForth Optimization Opportunities | HISTORICAL | |
| docs/working/archive/legacy/README.md | Archived Documentation | HISTORICAL | |
| docs/working/archive/legacy/START_HERE_HEARTBEAT_DOE.md | START HERE – Heartbeat DoE Phase 2 | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/BACKLOG_INJECTION_ANALYSIS.md | Backlog Injection Points Analysis | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/EXPERIMENT_QUICK_REFERENCE.txt | Watch CSV grow in real-time | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/IMPLEMENTATION_SUMMARY.md | Physics Engine Comprehensive Validation - Complete Implementation Summary | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/JENKINS_USER_GUIDE.md | Jenkins User Guide | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/KANBAN-TESTING-GUIDE.md | Kanban Workflow Testing Guide | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/KANBAN-WORKFLOW-TEST.md | Kanban Workflow Test Guide (Phase 3) | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/PHASE_1_FINAL_STATUS.md | Phase 1 Final Status & Completion Report | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/PHASE_1_IMPLEMENTATION_COMPLETE.md | Phase 1 Implementation Complete ✅ | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/PHASE_1_TESTING_RESULTS.md | Phase 1 Testing Results | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/PHYSICS_EXPERIMENT_README.md | StarForth Physics Engine Validation Experiment | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/RULE_1_GATES_IMPLEMENTATION.md | Rule 1: Governance-First Backlog Injection Gates Implementation | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/SECURITY.md | Security Policy | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/SESSION_SUMMARY.md | Session Summary: Governance Workflow Implementation Complete ✅ | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/StarForth_Complete_Presentation.pptx | StarForth_Complete_Presentation.pptx | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/TEST-CAPA-TEMPLATE.md | Test CAPA Issue Template | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/codex_audit_report.md | StarForth Governance – Fresh Audit Report | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/codex_capa_list.md | StarForth Governance – CAPA Register (Fresh Audit) | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/github_backlog_items.md | GitHub Project Backlog Prep | HISTORICAL | |
| docs/working/archive/legacy/phase-1/Reference/physics_experiment/ | 35 files | HISTORICAL | Grouped: bulk data or a self-governed tree. |
| docs/working/archive/legacy/phase-1/Reference/physics_experiment/PEER_REVIEW_SUBMISSION/02_SUPPORTING_DOCS/FORMAL_CLAIMS_FOR_REVIEWERS.txt | 0% / 70% | DELETE | Byte-identical to ../../FORMAL_CLAIMS_FOR_REVIEWERS.txt in the same archive. |
| docs/working/archive/legacy/phase-1/Reference/physics_experiment/PEER_REVIEW_SUBMISSION/02_SUPPORTING_DOCS/QUICK_REFERENCE.txt | Before mitigations (baseline) | DELETE | Byte-identical to ../../QUICK_REFERENCE.txt in the same archive. |
| docs/working/archive/legacy/phase-1/Reference/physics_experiment/PEER_REVIEW_SUBMISSION/03_EXPERIMENTAL_DATA/full_90_run_comprehensive/experiment_summary.txt | experiment_summary.txt | DELETE | Byte-identical to ../../../full_90_run_comprehensive/experiment_summary.txt in the same archive. |
| docs/working/archive/legacy/phase-1/Reference/physics_experiment/PEER_REVIEW_SUBMISSION/03_EXPERIMENTAL_DATA/full_90_run_comprehensive/run_logs/test_matrix.txt | test_matrix.txt | DELETE | Byte-identical to the same file in ../../../full_90_run_comprehensive/run_logs/. |
| docs/working/archive/legacy/phase-1/Reference/toolchain/ | 2 files | HISTORICAL | Grouped: bulk data or a self-governed tree. |
| docs/working/archive/operations/README.md | Operations | HISTORICAL | |
| docs/working/archive/operations/backlog-gatekeeper.md | Backlog Gatekeeper Procedures | HISTORICAL | |
| docs/working/archive/operations/jenkins-pipeline-guide.adoc | StarForth Jenkins Pipeline Guide | HISTORICAL | |
| docs/working/archive/operations/qa-intake-workflow.adoc | QA Intake & CAPA Backlog Population Workflow | HISTORICAL | |
| docs/working/archive/operations/refinement/annotations.adoc | StarForth Refinement Code Annotation Guide | HISTORICAL | |
| docs/working/archive/operations/refinement/capa.adoc | StarForth C↔Isabelle Refinement Defect Tracking | HISTORICAL | |
| docs/working/archive/operations/refinement/roadmap.adoc | StarForth C↔Isabelle Refinement Implementation Roadmap | HISTORICAL | |
| docs/working/archive/operations/workflow.md | StarForth CI/CD Workflow | HISTORICAL | |
| docs/working/archive/prog-prove.pdf | prog-prove.pdf | HISTORICAL | |
| docs/working/archive/quality/README.md | Quality Assurance | HISTORICAL | |
| docs/working/archive/quality/audits/codebase-audit-report.md | StarForth Codebase Audit Report | HISTORICAL | |
| docs/working/archive/quality/audits/corrective-actions.md | StarForth Codebase Audit: Corrective Actions Report | HISTORICAL | |
| docs/working/archive/quality/audits/implementation-audit.md | StarForth Adaptive Tuning: Implementation Audit | HISTORICAL | |
| docs/working/archive/quality/audits/section-2-audit.md | SECTION 2 AUDIT REPORT | HISTORICAL | |
| docs/working/archive/quality/audits/section-2-executive-summary.md | SECTION 2 EXECUTIVE SUMMARY | HISTORICAL | |
| docs/working/archive/quality/phase-tracking/phase-2-implementation-checklist.md | Phase 2 Implementation Checklist | HISTORICAL | |
| docs/working/archive/quality/phase-tracking/phase-2-issues-identified.md | Phase 2 Issues: Shrink/Grow, Decay Slope, Fixed-Point Violations | HISTORICAL | |
| docs/working/archive/quality/phase-tracking/phase-2a-session-summary.md | Phase 2a Session Summary: Linear Decay & Freeze Flag Implementation | HISTORICAL | |
| docs/working/archive/quality/regression/detection-framework.md | Optimization Regression Detection Framework | HISTORICAL | |
| docs/working/archive/quality/regression/opp-02-report.md | OPP #2: VARIANCE-BASED WINDOW WIDTH TUNING | HISTORICAL | |
| docs/working/archive/quality/validation/comprehensive-physics-validation.md | Comprehensive Physics Engine Validation Protocol | HISTORICAL | |
| docs/working/archive/quality/validation/phase-1-protocol.md | Phase 1 Governance Validation Protocol | HISTORICAL | |
| docs/working/archive/quality/validation/phase-2-executive-summary.md | Phase 2 Experiment: Executive Summary | HISTORICAL | |
| docs/working/archive/research/README.md | Research | HISTORICAL | |
| docs/working/archive/research/doe-metrics-schema.md | StarForth Design of Experiments (DoE) Metrics Schema | HISTORICAL | |
| docs/working/archive/research/literature-review.md | Literature Review: Physics-Driven VM Optimization | HISTORICAL | |
| docs/working/archive/research/research-outline.md | Research Paper Outline: Physics-Driven VM Optimization | HISTORICAL | |
| docs/working/archive/research/results-for-publication.md | Results for Publication: Physics-Driven VM Optimization | HISTORICAL | |
| docs/working/archive/session-logs/2025-11-20-recap.md | Session Recap: 2025-11-20 | HISTORICAL | |
| docs/working/archive/session-logs/2025-11-26-worklog.md | Work Log: November 26, 2025 | HISTORICAL | |
| docs/working/archive/session-logs/2026-07-05-worklog.md | Work Log: July 5, 2026 | HISTORICAL | |
| docs/working/archive/session-logs/2026-07-24-punch-list.md | Punch List: Gaps from 2026-07-24 Session | HISTORICAL | |
| docs/working/archive/session-logs/README.md | Session Logs | HISTORICAL | |
| docs/working/archive/session-logs/experimental-addendum.md | Window Scaling Experiment — Validation of the James Law of Computational Dynamic | HISTORICAL | |
| docs/working/archive/session-logs/experimental-iteration-usage.md | Experimental Iteration Runner - Usage Guide | HISTORICAL | |
| docs/working/archive/session-logs/serialized-questing-pike.md | StarForth → StarshipOS Hybrid Kernel Transformation Plan | HISTORICAL | |
| docs/working/archive/superseded/2025-12-14-starforth-roadmap.md | StarForth Roadmap: VM → Kernel → OS → FPGA | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/2026-07-08-hermes-message-block-storage-design.md | Hermes Message/Channel Block-Backed Storage — Design Doc | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/2026-07-08-hermes-message-channel-physics-design.md | Hermes Message/Channel Heat Physics — Design Doc | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/2026-08-02-artemis-hermes-compudynamics-plan.md | Artemis (and Hermes) Compudynamics — Implementation Plan | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/2026-08-tripod/03-architecture-README.md | docs/03-architecture/ | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/2026-08-tripod/ARTEMIS.md | ARTEMIS.md — Artemis VM Architecture | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/2026-08-tripod/HERMES.md | HERMES.md — Hermes VM Architecture | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/2026-08-tripod/README.md | docs/working/archive/superseded/2026-08-tripod/ | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/2026-08-tripod/TRIPOD.md | TRIPOD.md — Architectural Constraints for the Tripod VMs | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/L8_WIRING_PLAN.md | L8 Control Wiring Implementation Plan | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/factorial-doe/guide.md | StarForth Complete 2^6 Factorial Design of Experiments | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/factorial-doe/incompatible-configs.md | Handling Incompatible Configurations in Factorial DoE | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/factorial-doe/index.md | StarForth Complete 2^6 Factorial DoE - Documentation Index | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/factorial-doe/quick-start.md | Quick Start: Complete 2^6 Factorial DoE | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/factorial-doe/workflow.md | Factorial DoE Analysis Workflow | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/feedback-loops-analysis.md | StarForth Feedback Loops & Self-Optimization Analysis | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/heartbeat-doe-corrected-design.md | StarForth Heartbeat DoE – CORRECTED Design (Heartrate Focus) | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/heartbeat-doe-design.md | StarForth Factorial DoE with Heartbeat Integration | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/heartbeat-rate-logging-plan.md | Implementation Plan: Heartbeat Rate Logging | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/loop-5-sketch.md | Loop #5: Context-Aware Window Tuning - Design Sketch | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/archive/superseded/steady-state-machine.md | 1. Introduction | SUPERSEDED | See the file's own header for what replaces it. |
| docs/working/experiments/02-experiments/L8_WIRING_CODE_REVIEW_GUIDE.md | L8 Wiring Code Review Guide | WORKING | |
| docs/working/experiments/02-experiments/L8_WIRING_IMPLEMENTATION_SUMMARY.md | L8 Control Wiring Implementation Summary | WORKING | |
| docs/working/experiments/02-experiments/README.md | Experiments | WORKING | |
| docs/working/experiments/02-experiments/heartbeat-doe/execution-guide.md | StarForth Heartbeat DoE Experiment – Execution Guide | WORKING | |
| docs/working/experiments/02-experiments/heartbeat-doe/implementation-summary.md | StarForth Heartbeat DoE – Implementation Summary | WORKING | |
| docs/working/experiments/02-experiments/heartbeat-doe/phase2-corrected.md | StarForth Phase 2 Heartbeat DoE – CORRECTED AND FINALIZED | WORKING | |
| docs/working/experiments/02-experiments/james-law/protocol.md | Critical Window Scaling Experiment | WORKING | |
| docs/working/experiments/02-experiments/physics-optimization/doe-guide.md | StarForth Optimization DoE Guide | WORKING | |
| docs/working/experiments/02-experiments/physics-optimization/execution-guide.md | StarForth Physics Engine - Comprehensive Validation Experiment | WORKING | |
| docs/working/experiments/02-experiments/physics-optimization/hotwords-cache.md | Physics Engine Experiment: Hot-Words Cache Performance Analysis | WORKING | |
| docs/working/experiments/02-experiments/physics-optimization/proposals.md | Physics-Driven Optimization Proposals for StarForth | WORKING | |
| docs/working/experiments/02-experiments/physics-optimization/reproduce.md | Reproducing the Physics Engine Hot-Words Cache Experiment | WORKING | |
| docs/working/experiments/README.md | docs/working/experiments/ | WORKING | |
| docs/working/experiments/campaigns/doe_2x7/README.md | 2^7 Factorial Design of Experiments (DoE) | RECORD | Campaign data. |
| docs/working/experiments/campaigns/l8_attractor_map/SESSION_REPORT_2025-12-10.md | L8 Attractor Map: From Crashes to Computational Physics | RECORD | Campaign data. |
| docs/working/experiments/campaigns/l8_attractor_map/results_20251209_145907/ | 9 files | RECORD | Campaign data. |
| docs/working/experiments/campaigns/l8_attractor_map/run_log.txt | run_log.txt | RECORD | Campaign data. |
| docs/working/experiments/campaigns/l8_validation/EXPERIMENT_SUMMARY.txt | Quick test (10 reps, ~8 min) | RECORD | Campaign data. |
| docs/working/experiments/campaigns/l8_validation/README.md | L8 Jacquard Mode Selector Validation Experiment | RECORD | Campaign data. |
| docs/working/experiments/campaigns/l8_validation/l8_validation_20251208_102205/ | 2 files | RECORD | Campaign data. |
| docs/working/experiments/campaigns/l8_validation/l8_validation_30reps_20251126_135128/ | 2 files | RECORD | Campaign data. |
| docs/working/experiments/campaigns/shape_validation/README.md | Workload Shape Validation Experiment | RECORD | Campaign data. |
| docs/working/experiments/campaigns/shape_validation/shape_RAJ_run_20251127_093208/ | 2 files | RECORD | Campaign data. |
| docs/working/experiments/campaigns/shape_validation/shape_run_20251123_083147/ | 2 files | RECORD | Campaign data. |
| docs/working/experiments/campaigns/window_scaling/QUICK_START.md | Window Scaling Experiment - Quick Start Guide | RECORD | Campaign data. |
| docs/working/experiments/campaigns/window_scaling/README.md | Window Scaling Experiment — James Law Validation | RECORD | Campaign data. |
| docs/working/hardware/PGO_GUIDE.adoc | Interactive TUI | WORKING | |
| docs/working/hardware/PLATFORM_BUILD_GUIDE.adoc | POSIX Build (Linux/macOS/BSD) - DEFAULT | WORKING | |
| docs/working/hardware/README.md | docs/working/hardware/ | HISTORICAL | Flagged in its own header. |
| docs/working/hardware/performance-profiling/ARM64_OPTIMIZATIONS.adoc | Detect architecture | WORKING | |
| docs/working/hardware/performance-profiling/ASM_OPTIMIZATIONS.adoc | Add to CFLAGS | WORKING | |
| docs/working/hardware/performance-profiling/PROFILER.adoc | Run your typical Forth program with profiling | WORKING | |
| docs/working/hardware/platform-integration/PLATFORM_ABSTRACTION.adoc | POSIX build (default - Linux/macOS/BSD) | WORKING | |
| docs/working/hardware/platform-integration/RASPBERRY_PI_BUILD.adoc | Install dependencies | WORKING | |
| docs/working/legal/README.md | docs/working/legal/ — Patent-Adjacent Material (HOLD) | LEGAL HOLD | Not touched without Captain Bob. |
| docs/working/papers/ACADEMIC_WORDING_GUIDELINES.md | Academic Wording Guidelines for StarForth | WORKING | |
| docs/working/papers/ANTI_CLAIMS.md | Anti-Claims: What This Work Does NOT Claim | WORKING | |
| docs/working/papers/EXECUTIVE_SUMMARY.md | Executive Summary: StarForth in Plain English | WORKING | |
| docs/working/papers/FINAL_REPORT/appendix_glossary.adoc | appendix_glossary.adoc | WORKING | |
| docs/working/papers/FORMAL_CLAIM_TABLE.md | Formal Claim Table: StarForth Adaptive Runtime | WORKING | |
| docs/working/papers/NEGATIVE_RESULTS.md | Negative Results: Where StarForth Fails | WORKING | |
| docs/working/papers/NULL_HYPOTHESIS.md | Null Hypothesis and Falsification Criteria | WORKING | |
| docs/working/papers/ONTOLOGY.md | StarForth Ontology, Taxonomy, and Lexicon | DELETE | Older copy (v1.0) of docs/reference/ONTOLOGY.md (v1.1, 2026-08-13). |
| docs/working/papers/ONTOLOGY_README.md | StarForth Ontology Documentation | WORKING | |
| docs/working/papers/README.md | docs/working/papers/ | WORKING | |
| docs/working/papers/REPLICATION_INVITE.md | Invitation to Independent Replication | WORKING | |
| docs/working/papers/REPRODUCIBILITY.md | Reproducibility: One-Command Experiment Reproduction | WORKING | |
| docs/working/papers/SCIENTIFIC_DEFENSE_CHECKLIST.md | Scientific Defense Checklist | WORKING | |
| docs/working/papers/SENSITIVITY_ANALYSIS.md | Sensitivity Analysis: Parameter Robustness | WORKING | |
| docs/working/papers/SSRN_companion/Math_Companion_SSRN.pdf | Math_Companion_SSRN.pdf | WORKING | |
| docs/working/papers/SSRN_companion/Math_Companion_SSRN.tex | | WORKING | |
| docs/working/papers/SSRN_companion/figures/fig1_snake_trajectory.pdf | fig1_snake_trajectory.pdf | WORKING | |
| docs/working/papers/SSRN_companion/figures/fig2_K_vs_window.pdf | fig2_K_vs_window.pdf | WORKING | |
| docs/working/papers/SSRN_companion/figures/fig3_FFT_spectrum.pdf | fig3_FFT_spectrum.pdf | WORKING | |
| docs/working/papers/SSRN_companion/figures/fig4_golden_ratio_penalties.pdf | fig4_golden_ratio_penalties.pdf | WORKING | |
| docs/working/papers/SSRN_companion/figures/fig5_bimodal_distributions.pdf | fig5_bimodal_distributions.pdf | WORKING | |
| docs/working/papers/SSRN_companion/figures/fig6_performance_vs_k.pdf | fig6_performance_vs_k.pdf | WORKING | |
| docs/working/papers/SSRN_companion/figures/fig7_performance_by_regime.pdf | fig7_performance_by_regime.pdf | WORKING | |
| docs/working/papers/SYSTEM_NARRATIVE.pdf | SYSTEM_NARRATIVE.pdf | WORKING | |
| docs/working/papers/SYSTEM_NARRATIVE.tex | StarForth System Narrative}\\ | WORKING | |
| docs/working/papers/ontology.pdf | ontology.pdf | WORKING | |
| docs/working/papers/ontology.tex | StarForth Ontology: Formal Conceptual Framework for\\ | WORKING | |
| docs/working/papers/proposals/DARPA_SSM_Proposal_James.docx | DARPA_SSM_Proposal_James.docx | WORKING | |
| docs/working/papers/proposals/DARPA_SSM_Proposal_James.pdf | DARPA_SSM_Proposal_James.pdf | WORKING | |
| docs/working/papers/proposals/SSM_DARPA_Complete_Proposal_James_FINAL.docx | SSM_DARPA_Complete_Proposal_James_FINAL.docx | WORKING | |
| docs/working/papers/published/James_ACL_Security_Invariant_TTL_Mitigation.tex | % | WORKING | |
| docs/working/papers/published/James_Steady-State_Convergence_Adaptive_Runtime.pdf | James_Steady-State_Convergence_Adaptive_Runtime.pdf | WORKING | |
| docs/working/scratch/AGENTS.md | Repository Guidelines | WORKING | |
| docs/working/scratch/AI_AGENT_MANDATORY_README.md | AI_AGENT_MANDATORY_README.md | WORKING | |
| docs/working/scratch/COMMUNICATION_GUIDE.adoc | StarshipOS Analogy Cheat Sheet | WORKING | |
| docs/working/scratch/GOVERNANCE_EXPORT_NOTES.adoc | Governance Export Notes (Physics Phase 1) | WORKING | |
| docs/working/scratch/README.md | docs/working/scratch/ | WORKING | |
| docs/working/scratch/TASK_LIST.md | StarForth Physics Runtime — TASK_LIST.md | WORKING | |
| docs/working/scratch/assets/README.md | Binary Assets | WORKING | |
| docs/working/scratch/assets/book-FIXED.docx | book-FIXED.docx | WORKING | |
| docs/working/scratch/ci-cd/FMEA_BLOCKING_GATES.adoc | FMEA Blocking Gates Implementation | WORKING | |
| docs/working/scratch/ci-cd/GITHUB_ISSUES_GOVERNANCE_FLOW.adoc | GitHub Issues & Governance Integration | WORKING | |
| docs/working/scratch/ci-cd/GOVERNANCE_INPUT_AUDIT.adoc | Governance Input Audit & Compliance Checklist | WORKING | |
| docs/working/scratch/ci-cd/JENKINS_GOVERNANCE_INTEGRATION.adoc | Jenkins Governance Integration Guide | WORKING | |
| docs/working/scratch/governance/index.adoc | Governance | WORKING | |
| docs/working/scratch/src-index.adoc | StarForth Documentation Index | WORKING | |
| docs/working/scratch/src/INTEGRATION_NOTES.adoc | This blocks EVERYTHING because of empty line: | WORKING | |
| docs/working/scratch/src/development/CONTRIBUTING.adoc | 1) Fork and clone | WORKING | |
| docs/working/scratch/src/internal/PHASE_2A_COMPLETION_REPORT.adoc | Phase 2a Completion Report: Freeze Flag & Linear Decay | WORKING | |
| docs/working/scratch/src/internal/PHASE_2_IMPLEMENTATION_SUMMARY.adoc | Phase 2 Implementation Summary & Action Items | WORKING | |
| docs/working/scratch/src/internal/PHASE_2_PHYSICS_DECAY_AND_FREEZE.adoc | Phase 2: Physics Model Extensions — Decay & Freeze Mechanisms | WORKING | |
| docs/working/scratch/src/internal/PHYSICS_HOTWORDS_CACHE_INTEGRATION.adoc | Hot-Words Cache Integration Guide | WORKING | |
| docs/working/scratch/src/internal/PHYSICS_IMPLEMENTATION_OPTIONS.adoc | Physics Engine Implementation Options: Three Paths Forward | WORKING | |
| docs/working/scratch/src/internal/PHYSICS_IMPLEMENTATION_STATUS.adoc | Physics Engine Implementation Status: POSIX vs L4Re Porting Strategy | WORKING | |
| docs/working/scratch/src/internal/PHYSICS_SCHEDULING_PLAN.adoc | Physics-Driven Scheduling Metadata Plan | WORKING | |
| docs/working/scratch/testing-quality/KANBAN-WORKFLOW-VALIDATION.adoc | Kanban Workflow Validation Procedure | WORKING | |
| docs/working/specifications/HOLA_PROTOCOL.adoc | HOLA Shared Memory Protocol (Phase 1) | WORKING | |
| docs/working/specifications/README.md | docs/working/specifications/ | WORKING | |
## experiments
| Path | Title | Status | Notes |
|---|---|---|---|
| experiments/README.md | experiments/ | RECORD | Experiment design, data or result. |
## experiments/artemis_stress
| Path | Title | Status | Notes |
|---|---|---|---|
| experiments/artemis_stress/analysis/ | 6 files | RECORD | Experiment design, data or result. |
## experiments/bare_metal
| Path | Title | Status | Notes |
|---|---|---|---|
| experiments/bare_metal/README.md | Bare-Metal DoE Experiment | RECORD | Experiment design, data or result. |
| experiments/bare_metal/analysis/ | 130 files | RECORD | Experiment design, data or result. |
## experiments/std79-doe
| Path | Title | Status | Notes |
|---|---|---|---|
| experiments/std79-doe/README.md | std79 DoE — 3(architecture) × 9(identity) × 3(replicate) randomized full-factori | RECORD | Experiment design, data or result. |
| experiments/std79-doe/analysis-20260912/ | 2 files | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/README.md | std79-doe LaTeX report: the fleet conservation invariant K | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/actual_window_size_dark.pdf | actual_window_size_dark.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/actual_window_size_light.pdf | actual_window_size_light.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/apic_delta_dark.pdf | apic_delta_dark.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/apic_delta_light.pdf | apic_delta_light.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/artemis_heat_dark.pdf | artemis_heat_dark.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/artemis_heat_light.pdf | artemis_heat_light.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/avg_word_heat_dark.pdf | avg_word_heat_dark.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/avg_word_heat_light.pdf | avg_word_heat_light.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/fleet_k_dark.pdf | fleet_k_dark.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/fleet_k_light.pdf | fleet_k_light.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/hera_heat_dark.pdf | hera_heat_dark.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/hera_heat_light.pdf | hera_heat_light.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/hermes_heat_dark.pdf | hermes_heat_dark.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/hermes_heat_light.pdf | hermes_heat_light.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/hot_word_count_dark.pdf | hot_word_count_dark.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/hot_word_count_light.pdf | hot_word_count_light.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/jitter_ns_dark.pdf | jitter_ns_dark.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/jitter_ns_light.pdf | jitter_ns_light.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/time_trust_dark.pdf | time_trust_dark.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/time_trust_light.pdf | time_trust_light.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/variance_dark.pdf | variance_dark.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/variance_light.pdf | variance_light.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/vm_call_depth_max_dark.pdf | vm_call_depth_max_dark.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/vm_call_depth_max_light.pdf | vm_call_depth_max_light.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/window_width_dark.pdf | window_width_dark.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/figures/window_width_light.pdf | window_width_light.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/std79_doe_report.pdf | std79_doe_report.pdf | RECORD | Experiment design, data or result. |
| experiments/std79-doe/report-20260912/report/std79_doe_report.tex | % | RECORD | Experiment design, data or result. |
## experiments/std79-exerciser
| Path | Title | Status | Notes |
|---|---|---|---|
| experiments/std79-exerciser/README.md | FORTH-79 Standard-Dictionary Cross-ISA Exerciser | RECORD | Experiment design, data or result. |
| experiments/std79-exerciser/results-20260910/ | 27 files | RECORD | Experiment design, data or result. |
## img
| Path | Title | Status | Notes |
|---|---|---|---|
| img/README.md | img/ | CURRENT | |
## kernel
| Path | Title | Status | Notes |
|---|---|---|---|
| kernel/include/starkernel/README.md | include/starkernel/ | CURRENT | |
| kernel/include/starkernel/freestanding/README.md | include/starkernel/freestanding/ | CURRENT | |
| kernel/include/starkernel/freestanding/sys/README.md | include/starkernel/freestanding/sys/ | CURRENT | |
| kernel/include/starkernel/hal/README.md | include/starkernel/hal/ | CURRENT | |
| kernel/include/starkernel/vm/README.md | include/starkernel/vm/ | CURRENT | |
| kernel/include/starkernel/vm/bootstrap/README.md | include/starkernel/vm/bootstrap/ | CURRENT | |
| kernel/linker/README.md | linker/ | CURRENT | |
| kernel/src/README.md | src/starkernel/ | CURRENT | |
| kernel/src/arch/aarch64/README.md | src/starkernel/arch/aarch64/ | CURRENT | |
| kernel/src/arch/amd64/README.md | src/starkernel/arch/amd64/ | CURRENT | |
| kernel/src/arch/riscv64/README.md | src/starkernel/arch/riscv64/ | CURRENT | |
| kernel/src/boot/README.md | src/starkernel/boot/ | CURRENT | |
| kernel/src/capsule/README.md | src/starkernel/capsule/ | CURRENT | |
| kernel/src/hal/README.md | src/starkernel/hal/ | CURRENT | |
| kernel/src/hash/README.md | src/starkernel/hash/ | CURRENT | |
| kernel/src/math/README.md | src/starkernel/math/ | CURRENT | |
| kernel/src/memory/README.md | src/starkernel/memory/ | CURRENT | |
| kernel/src/pci/README.md | src/starkernel/pci/ | CURRENT | |
| kernel/src/virtio/README.md | src/starkernel/virtio/ | CURRENT | |
| kernel/src/vm/README.md | src/starkernel/vm/ | CURRENT | |
| kernel/src/vm/bootstrap/README.md | src/starkernel/vm/bootstrap/ | CURRENT | |
| kernel/src/vm/host/README.md | src/starkernel/vm/host/ | CURRENT | |
## lfs
| Path | Title | Status | Notes |
|---|---|---|---|
| lfs/README.md | lfs/ | CURRENT | |
## mk
| Path | Title | Status | Notes |
|---|---|---|---|
| mk/README.md | mk/ | CURRENT | |
## proof
| Path | Title | Status | Notes |
|---|---|---|---|
| proof/COVERAGE.md | Isabelle/HOL Proof Suite — Coverage & Purpose | CURRENT | |
| proof/FINDINGS.md | Isabelle/HOL Word-Source Sweep — Aggregated Architectural Findings | CURRENT | |
| proof/README.md | proof/ | CURRENT | |
## scripts
| Path | Title | Status | Notes |
|---|---|---|---|
| scripts/README.md | scripts/ | CURRENT | |
| scripts/SCRIPT_REPAIR_LOG.md | Ablation Study Script Repair Log | CURRENT | |
## tools
| Path | Title | Status | Notes |
|---|---|---|---|
| tools/README.md | tools/ | CURRENT | |
| tools/capsule-reserved.txt | capsule-reserved.txt — human-authored, git-tracked block ranges NOT | CURRENT | |
| tools/kconfig/README.md | tools/kconfig — vendored Linux kernel Kconfig tooling | CURRENT | |
## v3
| Path | Title | Status | Notes |
|---|---|---|---|
| v3/include/README.md | include/ | CURRENT | |
| v3/src/README.md | src/ | CURRENT | |
| v3/src/platform/README.md | src/platform/ | CURRENT | |
| v3/src/platform/l4re/README.md | src/platform/l4re/ | HISTORICAL | Flagged in its own header. |
| v3/src/platform/linux/README.md | src/platform/linux/ | CURRENT | |
| v3/src/test_runner/README.md | src/test_runner/ | CURRENT | |
| v3/src/test_runner/include/README.md | src/test_runner/include/ | CURRENT | |
| v3/src/test_runner/modules/README.md | src/test_runner/modules/ | CURRENT | |
| v3/src/word_source/README.md | src/word_source/ | CURRENT | |
| v3/src/word_source/include/README.md | src/word_source/include/ | CURRENT | |
## v4
| Path | Title | Status | Notes |
|---|---|---|---|
| v4/README.md | v4/ | CURRENT | |
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