rajamesandClaude Opus 5.5
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docs/CLAUDE.md Phase 2, 2026-10-14. All moves by git mv; every archived file carries a header saying what it is, why, and where to look instead. - docs/reference/ (new): roadmap and versioning policy, M7.1, word-ACL design, kernel args, hosted acceptance test, dictionary, primitives, ontology, L8 table -- previously spread over docs/, docs/lithosananke/ and docs/03-architecture/. - docs/working/archive/historical/: finished work (session plan, test-gap audit, birthing plan, fix write-ups, the January architecture draft). - docs/working/archive/superseded/: the Hermes-VM Tripod docs and July Hermes designs (-> FABRIC-3.5/3.6), the StarForth roadmap, every working doc already flagged superseded or obsolete. - docs/working/archive/dead/: the hal_* target contract (never adopted), L4Re, metrics-and-knobs. - Papers and proposals into docs/working/papers/. - References rewritten across the repo (not logs/, not docs/patent/); CLAUDE.md's documentation section rewritten. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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docs/working/legal/ — Patent-Adjacent Material (HOLD)
Status: This directory is intentionally empty pending Bob's instruction.
Per the ground rule in docs/CLAUDE.md — "Ask before touching legal/. Anything
patent-adjacent gets flagged for Bob's explicit instruction before moving or
editing." — the following files were NOT moved during the Phase 2
reorganization. They remain in docs/ exactly where they were.
Flagged, awaiting instruction
| Path (unchanged) | What it is |
|---|---|
| docs/patent/ (entire tree) | USPTO provisional patent: main.tex + sections/, compiled PDFs, USPTO forms (sb0015a/sb0016), final_provisional/, revision logs. |
| docs/working/papers/proposals/DARPA_SSM_Proposal_James.docx | DARPA SSM grant proposal (Word). |
| docs/working/papers/proposals/DARPA_SSM_Proposal_James.pdf | DARPA SSM grant proposal (PDF). |
| docs/working/papers/proposals/SSM_DARPA_Complete_Proposal_James_FINAL.docx | DARPA SSM complete/final proposal (Word, "FINAL"). |
| docs/SSM_DARPA_Summary_Slide.pptx | DARPA SSM summary slide deck. |
| docs/working/papers/SYSTEM_NARRATIVE.tex | Technical narrative written for patent counsel and reviewers. |
| docs/working/papers/SYSTEM_NARRATIVE.pdf | Compiled system narrative. |
Also deferred this pass (not legal, but left in place for safety)
These are LaTeX sources with coupled relative figure paths; moving them blindly
risks breaking \includegraphics. Deferred to a later, build-verified pass.
| Path (unchanged) | What it is |
|---|---|
| docs/working/papers/ontology.tex / docs/working/papers/ontology.pdf | Formal ontology LaTeX source + compiled PDF (strong formal/ candidate). |
| docs/ontology_diagrams.dot | Graphviz source for ontology diagrams. |
| docs/fig_.png / docs/fig_.svg | Shared figure assets referenced by the ontology and/or system-narrative LaTeX. |
When ready, tell Claude how to handle the patent/DARPA material (e.g. "move the patent tree into docs/working/legal/" or "leave it at docs/patent/").