docs: reorganise -- current reference gathered, finished work archived, superseded and dead ideas marked as such

docs/CLAUDE.md Phase 2, 2026-10-14.  All moves by git mv; every archived
file carries a header saying what it is, why, and where to look instead.

- docs/reference/ (new): roadmap and versioning policy, M7.1, word-ACL
  design, kernel args, hosted acceptance test, dictionary, primitives,
  ontology, L8 table -- previously spread over docs/, docs/lithosananke/
  and docs/03-architecture/.
- docs/working/archive/historical/: finished work (session plan, test-gap
  audit, birthing plan, fix write-ups, the January architecture draft).
- docs/working/archive/superseded/: the Hermes-VM Tripod docs and July
  Hermes designs (-> FABRIC-3.5/3.6), the StarForth roadmap, every working
  doc already flagged superseded or obsolete.
- docs/working/archive/dead/: the hal_* target contract (never adopted),
  L4Re, metrics-and-knobs.
- Papers and proposals into docs/working/papers/.
- References rewritten across the repo (not logs/, not docs/patent/);
  CLAUDE.md's documentation section rewritten.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
This commit is contained in:
rajames
2026-10-14 16:03:56 -04:00
co-authored by Claude Opus 5.5
parent 1a4b163861
commit 7aed588f78
116 changed files with 305 additions and 175 deletions
@@ -1,5 +1,5 @@
%% SCRAP: architecture/03-architecture/adaptive-systems/loop-5-sketch
%% SOURCE: docs/working/architecture/03-architecture/adaptive-systems/loop-5-sketch.md
%% SOURCE: docs/working/archive/superseded/loop-5-sketch.md
%% STATUS: WORKING
%% FITS: dev-guide/ch-physics
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%% SCRAP: architecture/03-architecture/hal/README
%% SOURCE: docs/working/architecture/03-architecture/hal/README.md
%% SOURCE: docs/working/archive/dead/hal-target-contract/README.md
%% STATUS: WORKING
%% FITS: dev-guide/ch-platform
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%% SCRAP: architecture/03-architecture/hal/interfaces
%% SOURCE: docs/working/architecture/03-architecture/hal/interfaces.md
%% SOURCE: docs/working/archive/dead/hal-target-contract/interfaces.md
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%% SCRAP: architecture/03-architecture/hal/migration-plan
%% SOURCE: docs/working/architecture/03-architecture/hal/migration-plan.md
%% SOURCE: docs/working/archive/dead/hal-target-contract/migration-plan.md
%% STATUS: WORKING
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%% SCRAP: architecture/03-architecture/hal/overview
%% SOURCE: docs/working/architecture/03-architecture/hal/overview.md
%% SOURCE: docs/working/archive/dead/hal-target-contract/overview.md
%% STATUS: WORKING
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%% SCRAP: architecture/03-architecture/hal/platform-implementations
%% SOURCE: docs/working/architecture/03-architecture/hal/platform-implementations.md
%% SOURCE: docs/working/archive/dead/hal-target-contract/platform-implementations.md
%% STATUS: WORKING
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%% SCRAP: architecture/03-architecture/hal/starkernel-integration
%% SOURCE: docs/working/architecture/03-architecture/hal/starkernel-integration.md
%% SOURCE: docs/working/archive/dead/hal-target-contract/starkernel-integration.md
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%% SCRAP: architecture/03-architecture/heartbeat-system/implementation-plan
%% SOURCE: docs/working/architecture/03-architecture/heartbeat-system/implementation-plan.md
%% SOURCE: docs/working/archive/superseded/heartbeat-rate-logging-plan.md
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%% SCRAP: architecture/03-architecture/physics-engine/feedback-loops-analysis
%% SOURCE: docs/working/architecture/03-architecture/physics-engine/feedback-loops-analysis.md
%% SOURCE: docs/working/archive/superseded/feedback-loops-analysis.md
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%% SCRAP: architecture/03-architecture/physics-engine/metrics-and-knobs
%% SOURCE: docs/working/architecture/03-architecture/physics-engine/metrics-and-knobs.md
%% SOURCE: docs/working/archive/dead/metrics-and-knobs.md
%% STATUS: WORKING
%% FITS: dev-guide/ch-physics, cookbook/ch-physics
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%% SCRAP: architecture/03-architecture/physics-engine/steady-state-machine
%% SOURCE: docs/working/architecture/03-architecture/physics-engine/steady-state-machine.md
%% SOURCE: docs/working/archive/superseded/steady-state-machine.md
%% STATUS: CURRENT
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%% SCRAP: architecture/getting-started/quick-start/factorial-doe
%% SOURCE: docs/working/architecture/getting-started/quick-start/factorial-doe.md
%% SOURCE: docs/working/archive/superseded/factorial-doe/quick-start.md
%% STATUS: CURRENT
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@@ -36,7 +36,7 @@ The audit assigned priority as follows.
\begin{itemize}
\item Add missing \texttt{README} files to all numbered directories.
\item Update \texttt{CLAUDE.md} to reflect HAL and StarKernel vision.
\item Create \texttt{docs/03-architecture/README.md} as a system overview.
\item Create \texttt{docs/working/archive/superseded/2026-08-tripod/03-architecture-README.md} as a system overview.
\end{itemize}
\textbf{Medium priority:}
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%% SCRAP: experiments/02-experiments/L8_WIRING_PLAN
%% SOURCE: docs/working/experiments/02-experiments/L8_WIRING_PLAN.md
%% SOURCE: docs/working/archive/superseded/L8_WIRING_PLAN.md
%% STATUS: HISTORICAL
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%% SCRAP: experiments/02-experiments/factorial-doe/guide
%% SOURCE: docs/working/experiments/02-experiments/factorial-doe/guide.md
%% SOURCE: docs/working/archive/superseded/factorial-doe/guide.md
%% STATUS: CURRENT
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%% SCRAP: experiments/02-experiments/factorial-doe/incompatible-configs
%% SOURCE: docs/working/experiments/02-experiments/factorial-doe/incompatible-configs.md
%% SOURCE: docs/working/archive/superseded/factorial-doe/incompatible-configs.md
%% STATUS: CURRENT
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%% SCRAP: experiments/02-experiments/factorial-doe/index
%% SOURCE: docs/working/experiments/02-experiments/factorial-doe/index.md
%% SOURCE: docs/working/archive/superseded/factorial-doe/index.md
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%% SCRAP: experiments/02-experiments/factorial-doe/workflow
%% SOURCE: docs/working/experiments/02-experiments/factorial-doe/workflow.md
%% SOURCE: docs/working/archive/superseded/factorial-doe/workflow.md
%% STATUS: CURRENT
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%% SCRAP: experiments/02-experiments/heartbeat-doe/corrected-design
%% SOURCE: docs/working/experiments/02-experiments/heartbeat-doe/corrected-design.md
%% SOURCE: docs/working/archive/superseded/heartbeat-doe-corrected-design.md
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%% SCRAP: experiments/02-experiments/heartbeat-doe/design
%% SOURCE: docs/working/experiments/02-experiments/heartbeat-doe/design.md
%% SOURCE: docs/working/archive/superseded/heartbeat-doe-design.md
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%% SCRAP: hardware/platform-integration/L4RE_DICTIONARY_ALLOCATION
%% SOURCE: docs/working/hardware/platform-integration/L4RE_DICTIONARY_ALLOCATION.adoc
%% SOURCE: docs/working/archive/dead/l4re/L4RE_DICTIONARY_ALLOCATION.adoc
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%% SCRAP: hardware/platform-integration/L4RE_INTEGRATION
%% SOURCE: docs/working/hardware/platform-integration/L4RE_INTEGRATION.adoc
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%% SCRAP: hardware/platform-integration/l_4_re_blkio_endpoints
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@@ -40,7 +40,7 @@ They are deferred to a later, build-verified pass.
\toprule
Path & Description \\
\midrule
\texttt{docs/ontology.tex} / \texttt{.pdf} & Formal ontology source and compiled PDF; candidate for \texttt{formal/}. \\
\texttt{docs/working/papers/ontology.tex} / \texttt{.pdf} & Formal ontology source and compiled PDF; candidate for \texttt{formal/}. \\
\texttt{docs/ontology\_diagrams.dot} & Graphviz source for ontology diagrams. \\
\texttt{docs/fig\_*.png} / \texttt{.svg} & Shared figure assets referenced by ontology and system narrative LaTeX. \\
\bottomrule
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%% SCRAP: scratch/src/L4RE_INTEGRATION_TODO
%% SOURCE: docs/working/scratch/src/L4RE_INTEGRATION_TODO.adoc
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